STRINGSTRING
R2601_10117 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10117" - Transglycosylase SLT domain protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10117Transglycosylase SLT domain protein (158 aa)    
Predicted Functional Partners:
R2601_09697
Uncharacterized protein (266 aa)
   
          0.731
R2601_27171
Uncharacterized protein (336 aa)
   
          0.690
R2601_21231
Uncharacterized protein (109 aa)
   
          0.682
R2601_15537
Uncharacterized protein (309 aa)
   
          0.674
R2601_21031
Uncharacterized protein (131 aa)
   
          0.641
R2601_15447
DNA polymerase I (935 aa)
     
 
  0.638
R2601_10112
Uncharacterized protein (287 aa)
              0.617
R2601_23338
Uncharacterized protein (198 aa)
   
          0.616
R2601_09917
Uncharacterized protein (329 aa)
   
          0.603
R2601_17844
Phasin, PhaP (219 aa)
   
          0.599
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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