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R2601_10149 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10149" - Peptidase, M24 family protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10149Peptidase, M24 family protein (398 aa)    
Predicted Functional Partners:
R2601_18690
Sarcosine oxidase alpha subunit (996 aa)
   
  0.948
R2601_10189
Sarcosine oxidase, alpha subunit family protein (1012 aa)
   
  0.948
R2601_18668
Putative sarcosine dehydrogenase protein (853 aa)
   
  0.932
R2601_10154
Acetylornithine deacetylase (384 aa)
   
 
  0.881
R2601_10159
Regulatory protein GntR, HTH (213 aa)
              0.848
ectC
N-acetyldiaminobutyrate dehydratase ; Catalyzes the circularization of gamma-N-acetyl- alpha,gamma-diaminobutyric acid (ADABA) to ectoine (1,4,5,6- tetrahydro-2-methyl-4-pyrimidine carboxylic acid), which is an excellent osmoprotectant (130 aa)
 
   
    0.822
R2601_26086
Ornithine cyclodeaminase protein (318 aa)
 
          0.745
R2601_15265
Aminomethyltransferase ; The glycine cleavage system catalyzes the degradation of glycine (375 aa)
   
  0.726
R2601_26101
Uncharacterized protein (456 aa)
 
        0.725
R2601_15447
DNA polymerase I (935 aa)
   
   
  0.683
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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