STRINGSTRING
R2601_10159 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10159" - Regulatory protein GntR, HTH in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10159Regulatory protein GntR, HTH (213 aa)    
Predicted Functional Partners:
R2601_10154
Acetylornithine deacetylase (384 aa)
              0.866
R2601_10149
Peptidase, M24 family protein (398 aa)
              0.848
R2601_23183
Putative gntR-family transcriptional regulator (221 aa)
   
          0.772
R2601_15712
Transcriptional Regulator, GntR family protein (213 aa)
   
          0.771
R2601_06018
GntR family transcriptional regulator (226 aa)
   
          0.769
R2601_18123
Transcriptional regulator, GntR family protein (239 aa)
   
          0.768
R2601_13274
Transcriptional regulator, GntR family protein (219 aa)
   
          0.767
R2601_04103
Uncharacterized protein (280 aa)
   
          0.761
R2601_01928
Putative transcriptional regulator protein, AsnC/GntR family (241 aa)
   
          0.761
R2601_00840
Bacterial regulatory proteins, AsnC family-Bacterial regulatory protein, GntR family (235 aa)
   
          0.759
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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