STRINGSTRING
R2601_10169 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10169" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10169Uncharacterized protein (223 aa)    
Predicted Functional Partners:
R2601_10174
Uncharacterized protein (288 aa)
              0.887
R2601_10164
Oxidoreductase, FAD-binding protein (346 aa)
 
          0.813
R2601_23635
Uncharacterized protein (424 aa)
     
      0.544
R2601_23555
Thiamine biosynthesis oxidoreductase ThiO (315 aa)
     
      0.544
R2601_18668
Putative sarcosine dehydrogenase protein (853 aa)
     
      0.544
R2601_17444
Oxidoreductase, FAD-binding protein (413 aa)
     
      0.544
R2601_06093
Probable oxidoreductase (429 aa)
     
      0.544
prmC
Protein-glutamine N-methyltransferase PrmC ; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif (282 aa)
     
 
  0.525
R2601_11109
Methyltransferase, putative (210 aa)
   
 
  0.505
R2601_12071
Uncharacterized protein (64 aa)
   
          0.429
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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