STRINGSTRING
R2601_10224 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10224" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10224Uncharacterized protein (75 aa)    
Predicted Functional Partners:
R2601_10219
Putative pre-16S rRNA nuclease ; Could be a nuclease involved in processing of the 5’-end of pre-16S rRNA (158 aa)
              0.887
R2601_10214
Cytochrome c-type biogenesis protein CycH (412 aa)
              0.742
R2601_26386
Uncharacterized protein (87 aa)
   
          0.730
R2601_10634
Uncharacterized protein (179 aa)
   
          0.638
R2601_23785
Uncharacterized protein (258 aa)
 
          0.562
R2601_12885
Uncharacterized protein (110 aa)
   
          0.556
R2601_11881
Uncharacterized protein (71 aa)
   
          0.526
R2601_10484
Uncharacterized protein (163 aa)
   
          0.465
R2601_13960
Uncharacterized protein (116 aa)
   
          0.454
R2601_24360
Uncharacterized protein (193 aa)
              0.451
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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