STRINGSTRING
R2601_10364 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10364" - Hydrolase, putative in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10364Hydrolase, putative (324 aa)    
Predicted Functional Partners:
R2601_07846
Uncharacterized protein (533 aa)
   
          0.758
R2601_07831
Uncharacterized protein (589 aa)
   
          0.746
R2601_26986
Uncharacterized protein (593 aa)
   
          0.703
R2601_12056
Uncharacterized protein (183 aa)
   
          0.692
R2601_16987
Uncharacterized protein (287 aa)
   
          0.660
R2601_07836
Uncharacterized protein (277 aa)
   
          0.582
R2601_16745
Putative porin (351 aa)
   
          0.554
R2601_14575
Uncharacterized protein (513 aa)
   
          0.530
R2601_14500
Flagellar protein, putative (405 aa)
   
          0.516
R2601_20169
Transcriptional regulator (182 aa)
   
          0.511
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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