STRINGSTRING
R2601_10444 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10444" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10444Uncharacterized protein (92 aa)    
Predicted Functional Partners:
rpoD
Sigma-70 ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (661 aa)
              0.820
R2601_10439
Uncharacterized protein (126 aa)
              0.695
R2601_11329
Uncharacterized protein (202 aa)
 
          0.621
R2601_25336
Uncharacterized protein (276 aa)
   
          0.612
R2601_15255
Uncharacterized protein (188 aa)
   
          0.575
R2601_17344
ABC transporter, fused inner membrane subunits (560 aa)
   
          0.555
dnaG
DNA primase ; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication (653 aa)
              0.495
R2601_17349
ABC transporter, periplasmic binding protein (400 aa)
   
          0.494
R2601_09857
ABC thiamine transporter, periplasmic substrate-binding protein (302 aa)
   
          0.457
R2601_05308
TRAP dicarboxylate family transporter, DctQ subunit (186 aa)
   
          0.404
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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