STRINGSTRING
R2601_10469 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10469" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10469Uncharacterized protein (477 aa)    
Predicted Functional Partners:
R2601_10479
Uncharacterized protein (249 aa)
 
          0.958
R2601_10474
Uncharacterized protein (178 aa)
 
          0.922
R2601_23435
Lipoprotein, putative (168 aa)
   
          0.762
R2601_09772
Uncharacterized protein (216 aa)
   
          0.749
R2601_21817
Uncharacterized protein (133 aa)
   
          0.700
R2601_25456
Uncharacterized protein (173 aa)
   
          0.685
R2601_19225
Lipoprotein, putative (787 aa)
   
          0.681
R2601_26926
Uncharacterized protein (1097 aa)
   
          0.679
R2601_27161
Uncharacterized protein (236 aa)
   
          0.669
R2601_18273
Uncharacterized protein (455 aa)
   
          0.665
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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