STRINGSTRING
R2601_10489 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10489" - Prephenate dehydratase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10489Prephenate dehydratase (277 aa)    
Predicted Functional Partners:
R2601_16380
Chorismate mutase (101 aa)
   
  0.989
R2601_12408
Chorismate mutase family protein (98 aa)
   
  0.988
R2601_16520
Aspartate aminotransferase (394 aa)
   
 
  0.981
R2601_15377
Prephenate dehydrogenase (302 aa)
 
 
  0.952
R2601_18950
Aspartate aminotransferase (400 aa)
 
 
  0.943
hisC
Imidazole acetol-phosphate transaminase (361 aa)
   
  0.919
aroC
5-enolpyruvylshikimate-3-phosphate phospholyase ; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system (366 aa)
 
 
  0.911
R2601_17674
Histidinol-phosphate aminotransferase (372 aa)
   
  0.904
aroB
3-dehydroquinate synthase (370 aa)
 
 
  0.845
aroK
Shikimate kinase ; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate (192 aa)
 
 
  0.842
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (6%) [HD]