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R2601_10509 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10509" - Oligopeptide/dipeptide uptake family ABC transporter, permease protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10509Oligopeptide/dipeptide uptake family ABC transporter, permease protein (406 aa)    
Predicted Functional Partners:
R2601_10514
Oligopeptide/dipeptide uptake family ABC transporter, ATP-binding protein (530 aa)
 
  0.995
R2601_10504
ABC peptide transporter, inner membrane subunit (361 aa)
 
  0.993
R2601_10499
ABC peptide transporter, substrate binding protein (630 aa)
 
  0.992
R2601_11564
Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein (570 aa)
 
  0.964
R2601_17524
ATP/GTP-binding site motif A (P-loop)-ABC transporter-AAA ATPase (602 aa)
 
  0.960
R2601_25011
ABC transporter, periplasmic substrate-binding protein (606 aa)
 
  0.949
R2601_21517
ABC peptide transporter, fused ATPase domains (599 aa)
   
    0.871
R2601_05823
Peptide/nickel/opine uptake family ABC transporter, ATP-binding protein, putative (579 aa)
   
    0.841
R2601_18148
ABC transporter ATP-binding protein (537 aa)
   
    0.813
R2601_20776
ABC transporter ATP-binding protein (607 aa)
   
    0.795
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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