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R2601_10514 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10514" - Oligopeptide/dipeptide uptake family ABC transporter, ATP-binding protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10514Oligopeptide/dipeptide uptake family ABC transporter, ATP-binding protein (530 aa)    
Predicted Functional Partners:
R2601_10509
Oligopeptide/dipeptide uptake family ABC transporter, permease protein (406 aa)
 
  0.995
R2601_10504
ABC peptide transporter, inner membrane subunit (361 aa)
 
  0.994
R2601_10499
ABC peptide transporter, substrate binding protein (630 aa)
 
  0.993
R2601_25011
ABC transporter, periplasmic substrate-binding protein (606 aa)
 
  0.956
R2601_17519
ABC-type dipeptide/oligopeptide/nickel transport system, permease components (311 aa)
   
  0.892
R2601_17514
ABC-type dipeptide/oligopeptide/nickel transport system, permease components (307 aa)
     
  0.891
R2601_21502
ABC peptide transporter, inner membrane subunit (116 aa)
   
  0.838
R2601_17509
ABC-type oligopeptide transport system, periplasmic component (541 aa)
   
 
  0.835
R2601_11574
Peptide/opine/nickel uptake family ABC transporter, permease protein (314 aa)
   
  0.829
R2601_20766
ABC transporter permease protein (323 aa)
 
   
  0.825
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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