STRINGSTRING
R2601_10519 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10519" - Coproporphyrinogen-III oxidase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10519Coproporphyrinogen-III oxidase (442 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen decarboxylase ; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III (343 aa)
 
 
  0.980
R2601_11119
Coproporphyrinogen oxidase (298 aa)
   
 
  0.900
R2601_14720
Coproporphyrinogen III oxidase (383 aa)
   
 
0.862
R2601_10524
Transcriptional activator protein FnrL (248 aa)
 
 
  0.858
R2601_10569
Iron-sulfur-binding protein, RdxA/RdxB/FixG family (477 aa)
 
     
  0.835
R2601_10539
Cytochrome c oxidase, cbb3-type, subunit I (537 aa)
 
     
  0.818
R2601_10544
Cytochrome c oxidase, cbb3-type, subunit II (242 aa)
 
     
  0.806
R2601_08536
Protoporphyrinogen oxidase (180 aa)
   
   
  0.795
R2601_10554
Cbb3-type cytochrome c oxidase subunit ; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex (293 aa)
 
     
  0.768
R2601_25461
Delta-aminolevulinic acid dehydratase (332 aa)
 
   
  0.658
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (8%) [HD]