Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Alanine dehydrogenase (370 aa)
Predicted Functional Partners:
Alanine racemase ; Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids (345 aa)
Glutamate synthase, large subunit (1537 aa)
Transcriptional regulator, AsnC family protein (152 aa)
Aminotransferase, classes I and II (381 aa)
Aspartate aminotransferase (400 aa)
Putative aminotransferase protein (399 aa)
Aminotransferase, classes I and II (393 aa)
Uncharacterized protein (157 aa)
ATP-dependent NAD kinase ; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2’-hydroxyl of the adenosine moiety of NAD to yield NADP (253 aa)
Uncharacterized protein (440 aa)
Your Current Organism:
NCBI taxonomy Id: 314265 Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601