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R2601_10629 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10629" - Rod shape-determining protein MreC in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10629Rod shape-determining protein MreC (302 aa)    
Predicted Functional Partners:
R2601_10624
Rod shape-determining protein MreB (341 aa)
 
 
  0.995
R2601_10639
Beta-lactamase (625 aa)
 
   
  0.971
R2601_10644
Rod shape-determining protein MreD (379 aa)
 
 
  0.970
R2601_10634
Uncharacterized protein (179 aa)
 
          0.900
R2601_10649
D-isomer specific 2-hydroxyacid dehydrogenase family protein (310 aa)
   
   
  0.846
R2601_21161
Cell division protein FtsW (386 aa)
 
 
  0.738
R2601_12950
Penicillin-binding protein, 1A family (727 aa)
 
 
  0.719
R2601_21126
Penicillin-binding protein (596 aa)
 
   
  0.718
clpS
ATP-dependent Clp protease adapter protein ClpS ; Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation (120 aa)
       
      0.715
R2601_11089
D-alanyl-D-alanine carboxypeptidase family protein (486 aa)
 
   
  0.633
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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