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R2601_10684 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10684" - DNA-binding protein, H-NS family in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10684DNA-binding protein, H-NS family (103 aa)    
Predicted Functional Partners:
deoD
Purine nucleoside phosphorylase DeoD-type (234 aa)
              0.866
R2601_15417
Uncharacterized protein (867 aa)
   
          0.558
R2601_10679
Methylmalonyl-CoA mutase (665 aa)
              0.527
R2601_11219
Universal stress family protein (152 aa)
   
          0.484
R2601_10764
Succinate dehydrogenase, hydrophobic membrane anchor protein (123 aa)
   
          0.483
R2601_13529
Conserved hypoothetical protein (88 aa)
   
          0.477
R2601_25671
Uncharacterized protein (75 aa)
   
          0.406
R2601_13845
Lipoprotein, putative (221 aa)
   
          0.404
R2601_11609
Uncharacterized protein (168 aa)
   
        0.402
R2601_08863
Uncharacterized protein (69 aa)
   
          0.401
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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