STRINGSTRING
R2601_10779 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10779" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10779Uncharacterized protein (343 aa)    
Predicted Functional Partners:
R2601_12835
Isobutyryl-CoA dehydrogenase (562 aa)
 
 
  0.987
R2601_18553
Enoyl-CoA hydratase/isomerase-3-hydroxyacyl-CoA dehydrogenase, 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein (666 aa)
   
 
  0.977
R2601_17988
Enoyl-CoA hydratase (634 aa)
   
 
  0.977
acpS
4’-phosphopantetheinyl transferase AcpS ; Transfers the 4’-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein (134 aa)
 
  0.966
R2601_02538
3-hydroxybutyryl-CoA dehydrogenase (473 aa)
   
  0.962
R2601_10794
Citrate lyase, beta subunit (283 aa)
 
 
  0.958
R2601_12540
Beta subunit of citrate lyase (319 aa)
 
 
  0.958
R2601_10674
Alcohol dehydrogenase (428 aa)
 
 
  0.908
R2601_26111
Acyl-CoA dehydrogenase (379 aa)
   
 
  0.887
R2601_21712
Isovaleryl-CoA dehydrogenase (387 aa)
   
 
  0.887
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (12%) [HD]