STRINGSTRING
R2601_10789 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10789" - NnrU family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10789NnrU family protein (181 aa)    
Predicted Functional Partners:
R2601_10784
Uncharacterized protein (67 aa)
              0.860
R2601_10779
Uncharacterized protein (343 aa)
 
          0.849
R2601_10794
Citrate lyase, beta subunit (283 aa)
              0.727
R2601_10764
Succinate dehydrogenase, hydrophobic membrane anchor protein (123 aa)
 
          0.651
R2601_07113
Lipoprotein, putative (203 aa)
   
          0.597
R2601_15417
Uncharacterized protein (867 aa)
   
          0.577
R2601_13845
Lipoprotein, putative (221 aa)
   
          0.571
R2601_17844
Phasin, PhaP (219 aa)
   
          0.567
R2601_17849
Phasin, PhaP (148 aa)
   
          0.558
R2601_08863
Uncharacterized protein (69 aa)
   
          0.545
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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