STRINGSTRING
R2601_10799 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10799" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10799Uncharacterized protein (106 aa)    
Predicted Functional Partners:
R2601_18508
Uncharacterized protein (101 aa)
   
          0.735
R2601_13845
Lipoprotein, putative (221 aa)
   
          0.671
R2601_08331
Uncharacterized protein (63 aa)
   
          0.664
R2601_09777
Lipoprotein, putative (226 aa)
   
          0.655
R2601_26241
Lipoprotein, putative (202 aa)
   
          0.652
R2601_18403
Lipoprotein, putative (218 aa)
   
          0.644
R2601_15417
Uncharacterized protein (867 aa)
   
          0.632
R2601_07113
Lipoprotein, putative (203 aa)
   
          0.589
R2601_17769
Uncharacterized protein (110 aa)
   
          0.587
R2601_06348
Putative DNA-binding protein (368 aa)
   
          0.585
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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