STRINGSTRING
R2601_10849 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10849" - Inner membrane protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10849Inner membrane protein (129 aa)    
Predicted Functional Partners:
R2601_10844
Inner membrane protein (130 aa)
 
       
0.876
R2601_10839
Uncharacterized protein (78 aa)
              0.859
R2601_10854
Dihydrolipoyl dehydrogenase (464 aa)
              0.641
R2601_10834
2-oxoglutarate dehydrogenase complex component E2 ; The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) (512 aa)
              0.617
R2601_10829
2-oxoglutarate dehydrogenase, E1 component (990 aa)
              0.595
R2601_22047
Uncharacterized protein (541 aa)
   
          0.425
R2601_12091
Uncharacterized protein (177 aa)
   
          0.417
R2601_05973
TonB dependent-iron siderophore receptor (642 aa)
   
          0.407
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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