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R2601_10859 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10859" - Twin-arginine translocation pathway signal in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10859Twin-arginine translocation pathway signal (252 aa)    
Predicted Functional Partners:
R2601_21997
Adenylosuccinase (434 aa)
       
  0.700
R2601_13104
3-carboxy-cis,cis-muconate cycloisomerase (350 aa)
       
  0.700
R2601_05333
Phenol 2-monooxygenase (640 aa)
 
 
  0.660
R2601_21697
Salicylate hydroxylase (392 aa)
 
 
  0.659
R2601_03208
Uncharacterized protein (378 aa)
 
 
  0.625
R2601_13109
4-hydroxybenzoate 3-monooxygenase (392 aa)
 
   
    0.567
R2601_12825
Putative cycloisomerase (375 aa)
   
 
  0.564
R2601_12528
Mandelate racemase/muconate lactonizing enzyme family protein (329 aa)
   
 
  0.564
R2601_02998
Isomerase/lactonizing enzyme (382 aa)
   
 
  0.564
R2601_10874
Cell division protein FtsX (177 aa)
              0.564
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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