STRINGSTRING
R2601_10944 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10944" - Transcriptional regulator PetP in Pelagibaca bermudensis
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10944Transcriptional regulator PetP (170 aa)    
Predicted Functional Partners:
R2601_10949
DNA-binding response regulator PetR (233 aa)
         
  0.925
R2601_10939
Branched-chain amino acid aminotransferase (289 aa)
              0.742
R2601_09522
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (350 aa)
 
 
        0.729
xseB
Exodeoxyribonuclease VII small subunit ; Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides (80 aa)
              0.661
R2601_10964
Geranylgeranyl pyrophosphate synthetase (289 aa)
              0.661
R2601_10954
Histone deacetylase family protein (308 aa)
              0.639
dxs
1-deoxyxylulose-5-phosphate synthase ; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) (641 aa)
              0.608
R2601_10974
Uncharacterized protein (166 aa)
   
          0.585
R2601_22462
Uncharacterized protein (60 aa)
   
          0.507
R2601_06988
DNA-binding response regulator (240 aa)
         
  0.491
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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