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R2601_10954 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10954" - Histone deacetylase family protein in Pelagibaca bermudensis
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10954Histone deacetylase family protein (308 aa)    
Predicted Functional Partners:
R2601_10964
Geranylgeranyl pyrophosphate synthetase (289 aa)
   
        0.889
xseB
Exodeoxyribonuclease VII small subunit ; Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides (80 aa)
         
  0.889
dxs
1-deoxyxylulose-5-phosphate synthase ; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) (641 aa)
              0.863
R2601_19180
NAD-dependent deacetylase (229 aa)
   
  0.718
R2601_19624
Possible ATP-dependent RNA helicase (156 aa)
     
  0.717
R2601_19619
Possible ATP-dependent RNA helicase (978 aa)
     
  0.717
mutS
DNA mismatch repair protein MutS ; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity (874 aa)
   
      0.668
R2601_10949
DNA-binding response regulator PetR (233 aa)
              0.640
R2601_10944
Transcriptional regulator PetP (170 aa)
              0.639
R2601_00910
Ribose-5-phosphate isomerase B (153 aa)
       
    0.634
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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