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R2601_10964 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10964" - Geranylgeranyl pyrophosphate synthetase in Pelagibaca bermudensis
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second shell of interactors
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some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
R2601_10964Geranylgeranyl pyrophosphate synthetase (289 aa)    
Predicted Functional Partners:
idi
Isopentenyl pyrophosphate isomerase ; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP) (173 aa)
   
  0.988
dxs
1-deoxyxylulose-5-phosphate synthase ; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) (641 aa)
   
  0.976
xseB
Exodeoxyribonuclease VII small subunit ; Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides (80 aa)
   
        0.968
R2601_23785
Uncharacterized protein (258 aa)
   
  0.937
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase ; Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) (315 aa)
   
  0.900
R2601_10954
Histone deacetylase family protein (308 aa)
   
        0.889
R2601_25096
Isoprenyl transferase ; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids (241 aa)
 
  0.887
R2601_11886
Decaprenyl diphosphate synthase (331 aa)
 
 
0.849
ubiA
4-HB polyprenyltransferase ; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate (343 aa)
 
 
  0.845
R2601_05403
Uncharacterized protein (494 aa)
   
 
  0.826
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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