STRINGSTRING
R2601_10989 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10989" - DNA-binding response regulator in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10989DNA-binding response regulator (86 aa)    
Predicted Functional Partners:
R2601_10984
DNA-binding response regulator (142 aa)
          0.927
R2601_10974
Uncharacterized protein (166 aa)
 
          0.780
R2601_10979
GTP cyclohydrolase-2 ; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5’-phosphate (DARP), formate and pyrophosphate (364 aa)
              0.772
R2601_17269
Sensor histidine kinase (460 aa)
   
     
  0.574
R2601_10949
DNA-binding response regulator PetR (233 aa)
   
   
  0.507
R2601_16885
DNA-binding response regulator ChvI (233 aa)
   
   
  0.486
R2601_09787
Cell cycle transcriptional regulator CtrA (231 aa)
   
   
  0.478
R2601_04818
Two-component system, regulatory protein (226 aa)
   
   
  0.466
lexA
LexA repressor ; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair (231 aa)
   
          0.465
R2601_24944
Phosphate regulon transcriptional regulatory protein PhoB (229 aa)
   
   
  0.450
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (8%) [HD]