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R2601_11009 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11009" - Polyribonucleotide nucleotidyltransferase in Pelagibaca bermudensis
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11009Polyribonucleotide nucleotidyltransferase (250 aa)    
Predicted Functional Partners:
R2601_11004
Polyribonucleotide nucleotidyltransferase (463 aa)
          0.996
R2601_14830
PolyA polymerase family protein (363 aa)
   
  0.826
rne
Ribonuclease E ; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs (985 aa)
   
  0.812
R2601_09320
Ribonuclease, Rne/Rng family protein (283 aa)
   
  0.812
R2601_19150
ATP-dependent helicase HrpB (814 aa)
     
  0.811
tgt
tRNA-guanine transglycosylase ; Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hypermodified nucleoside queuosine (Q) (7-(((4,5-cis- dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) (375 aa)
 
   
  0.776
infB
Translation initiation factor IF-2 ; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (822 aa)
   
 
  0.755
R2601_26996
ATP-dependent RNA helicase RhlE (502 aa)
   
 
  0.750
R2601_21071
ATP-dependent RNA helicase, DEAD/DEAH box family protein (727 aa)
   
 
  0.750
R2601_18163
Putative ATP-dependent RNA helicase protein (430 aa)
   
 
  0.750
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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