STRINGSTRING
R2601_11014 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11014" - Subtilisin-like serine protease-like protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11014Subtilisin-like serine protease-like protein (763 aa)    
Predicted Functional Partners:
R2601_14795
Uncharacterized protein (246 aa)
   
          0.601
R2601_26646
TRAP dicarboxylate transporter, DctQ subunit (190 aa)
   
          0.578
R2601_09492
Putative binding protein dependent transport lipoprotein (450 aa)
   
          0.478
R2601_26651
TRAP dicarboxylate transporter, DctP subunit (346 aa)
   
          0.468
R2601_09507
Uncharacterized protein (408 aa)
   
          0.465
R2601_11019
Ribosomal protein S15 (69 aa)
              0.453
R2601_26641
TRAP dicarboxylate transporter, DctM subunit, putative (465 aa)
   
          0.448
R2601_11009
Polyribonucleotide nucleotidyltransferase (250 aa)
              0.432
R2601_11004
Polyribonucleotide nucleotidyltransferase (463 aa)
              0.432
R2601_09497
Putative integral membrane binding protein dependent transport protein (413 aa)
   
          0.416
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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