STRINGSTRING
R2601_11029 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11029" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11029Uncharacterized protein (179 aa)    
Predicted Functional Partners:
R2601_11034
Threonine dehydratase (323 aa)
              0.636
R2601_11024
Type I secretion target repeat protein (313 aa)
              0.627
R2601_24514
Acyl carrier protein, putative (80 aa)
   
          0.581
R2601_26456
Uncharacterized protein (459 aa)
   
          0.570
R2601_19584
Endonuclease/exonuclease/phosphatase family protein (333 aa)
   
          0.539
R2601_11039
Oxidoreductase FAD/NAD(P)-binding protein (484 aa)
              0.515
R2601_22307
Uncharacterized protein (224 aa)
   
          0.482
truB
tRNA-uridine isomerase ; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (304 aa)
 
          0.477
R2601_11019
Ribosomal protein S15 (69 aa)
              0.413
R2601_16745
Putative porin (351 aa)
   
          0.412
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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