STRINGSTRING
R2601_11064 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11064" - Metal-dependent hydrolase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11064Metal-dependent hydrolase (223 aa)    
Predicted Functional Partners:
cls
Cardiolipin synthetase ; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol (473 aa)
 
        0.904
R2601_24594
Putative 4-alpha-glucanotransferase (413 aa)
       
    0.660
R2601_24589
Putative 4-alpha-glucanotransferase (199 aa)
       
    0.660
R2601_11074
Exodeoxyribonuclease III, putative (262 aa)
     
      0.652
R2601_11059
Thioredoxin (305 aa)
              0.579
R2601_17087
Uncharacterized protein (495 aa)
 
        0.578
R2601_11054
ATP-dependent protease La domain protein (215 aa)
              0.521
R2601_11049
UPF0434 protein R2601_11049 (65 aa)
              0.521
R2601_17284
Uncharacterized protein (1579 aa)
   
        0.504
R2601_25291
Uncharacterized protein (261 aa)
   
          0.469
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (9%) [HD]