STRINGSTRING
R2601_11244 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11244" - Peptidase, family S49 in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11244Peptidase, family S49 (265 aa)    
Predicted Functional Partners:
R2601_11239
K+-dependent Na+/Ca+ exchanger related-protein (320 aa)
              0.704
R2601_11234
Short chain dehydrogenase (263 aa)
              0.695
glyS
Glycyl-tRNA synthetase beta subunit (741 aa)
 
        0.628
R2601_11831
Dihydropyrimidine dehydrogenase (434 aa)
       
    0.626
R2601_25361
O-acetylserine (Thiol)-lyase, cysteine synthase (342 aa)
   
      0.607
R2601_01978
Ribitol kinase (542 aa)
       
      0.605
glyQ
Glycyl-tRNA synthetase alpha subunit (309 aa)
 
        0.598
R2601_15447
DNA polymerase I (935 aa)
   
   
  0.573
lpxK
Lipid A 4’-kinase ; Transfers the gamma-phosphate of ATP to the 4’-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4’-bis-phosphate (lipid IVA) (329 aa)
 
          0.566
rho
ATP-dependent helicase Rho ; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho’s RNA-dependent ATPase activity, and release of the mRNA from the DNA template (423 aa)
 
          0.521
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (16%) [HD]