STRINGSTRING
lysS protein (Pelagibaca bermudensis) - STRING interaction network
"lysS" - Lysyl-tRNA synthetase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysSLysyl-tRNA synthetase (525 aa)    
Predicted Functional Partners:
tyrS
Tyrosyl-tRNA synthetase ; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction- tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) (417 aa)
   
     
  0.860
cysS
Cysteinyl-tRNA synthetase (461 aa)
           
  0.818
leuS
Leucyl-tRNA synthetase (856 aa)
     
 
  0.766
R2601_18303
Uncharacterized protein (258 aa)
   
          0.763
R2601_11299
Uncharacterized protein (141 aa)
              0.745
R2601_23388
Uncharacterized protein (158 aa)
   
          0.688
R2601_11289
Uncharacterized protein (134 aa)
              0.674
R2601_15245
Glutamyl-tRNA synthetase ; Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction- glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) (445 aa)
   
     
  0.667
thyX
Thymidylate synthase ThyX ; Catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate (304 aa)
   
          0.633
R2601_17619
Type I secretion outer membrane protein, TolC family (468 aa)
   
          0.592
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (9%) [HD]