STRINGSTRING
R2601_11299 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11299" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11299Uncharacterized protein (141 aa)    
Predicted Functional Partners:
R2601_09797
Uncharacterized protein (237 aa)
   
          0.773
R2601_17629
Uncharacterized protein (109 aa)
   
          0.747
lysS
Lysyl-tRNA synthetase (525 aa)
              0.745
R2601_19317
Dihydroneopterin aldolase, putative (303 aa)
   
          0.742
R2601_14190
Uncharacterized protein (110 aa)
   
          0.677
R2601_11449
Uncharacterized protein (410 aa)
   
          0.674
R2601_10214
Cytochrome c-type biogenesis protein CycH (412 aa)
   
          0.670
R2601_16450
F-type ATPase subunit b ; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) (187 aa)
   
          0.659
R2601_26001
Uncharacterized protein (193 aa)
   
          0.609
R2601_25161
Uncharacterized protein (104 aa)
   
          0.604
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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