STRINGSTRING
R2601_11324 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11324" - Cold shock family protein in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11324Cold shock family protein (68 aa)    
Predicted Functional Partners:
R2601_26996
ATP-dependent RNA helicase RhlE (502 aa)
   
  0.777
R2601_21071
ATP-dependent RNA helicase, DEAD/DEAH box family protein (727 aa)
   
  0.777
R2601_18163
Putative ATP-dependent RNA helicase protein (430 aa)
   
  0.777
R2601_08928
Helicase, putative (989 aa)
   
  0.762
dnaK
Heat shock protein 70 ; Acts as a chaperone (642 aa)
   
  0.682
R2601_19150
ATP-dependent helicase HrpB (814 aa)
       
  0.608
R2601_22267
Peptidyl-prolyl cis-trans isomerase ; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (183 aa)
   
  0.582
R2601_22262
Peptidyl-prolyl cis-trans isomerase ; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (168 aa)
   
  0.582
rpoA
Transcriptase subunit alpha ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (338 aa)
     
  0.577
R2601_11319
Uncharacterized protein (60 aa)
              0.514
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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