STRINGSTRING
R2601_11329 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11329" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11329Uncharacterized protein (202 aa)    
Predicted Functional Partners:
R2601_17349
ABC transporter, periplasmic binding protein (400 aa)
 
          0.872
R2601_17344
ABC transporter, fused inner membrane subunits (560 aa)
 
          0.872
R2601_17339
Putative atp-binding abc transporter protein (212 aa)
 
        0.869
R2601_25091
Phosphatidate cytidylyltransferase (262 aa)
   
 
  0.865
R2601_26276
Phosphatidylglycerolphosphate phosphatase A ; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) (161 aa)
       
  0.854
R2601_17257
Uncharacterized protein (251 aa)
 
        0.830
R2601_14170
Ribonuclease R (506 aa)
       
      0.704
R2601_14165
Ribonuclease R (235 aa)
       
      0.704
R2601_02338
ABC transporter, substrate binding protein (Ferrichrome) (278 aa)
   
 
      0.703
R2601_16800
Uncharacterized protein (161 aa)
   
  0.677
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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