STRINGSTRING
R2601_11364 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11364" - Putative DedA family, membrane protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11364Putative DedA family, membrane protein (190 aa)    
Predicted Functional Partners:
R2601_11369
Predicted Glycosyl transferase, family 2 (233 aa)
 
          0.946
R2601_11359
Putative ceramide glucosyltransferase (378 aa)
 
          0.922
R2601_11354
Uncharacterized protein (273 aa)
              0.859
R2601_02353
ABC multidrug efflux transporter, fused ATPase and inner membrane subunits (566 aa)
   
          0.543
modC
Molybdenum import ATP-binding protein ModC ; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system (366 aa)
              0.535
R2601_11344
Molybdate transport permease protein (230 aa)
              0.535
R2601_11339
ABC transporter, substrate binding protein (Molybdate) (256 aa)
              0.530
R2601_20249
Putative D-alanyl-D-alanine carboxypeptidase (520 aa)
   
          0.503
R2601_21487
Transcription antitermination protein (200 aa)
   
          0.492
R2601_18273
Uncharacterized protein (455 aa)
   
          0.487
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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