STRINGSTRING
R2601_11384 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11384" - Endoribonuclease L-PSP family protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11384Endoribonuclease L-PSP family protein (138 aa)    
Predicted Functional Partners:
R2601_11379
Uncharacterized protein (225 aa)
 
          0.954
R2601_11374
Acetylornithine deacetylase (360 aa)
 
          0.886
R2601_09200
Flavin-containing monooxygenase FMO (428 aa)
 
          0.872
R2601_09188
Putative transcriptional regulator (180 aa)
 
          0.849
R2601_11389
Rieske 2Fe-2S domain protein (374 aa)
 
          0.798
R2601_14010
Uncharacterized protein (225 aa)
 
          0.773
R2601_05993
Acetylornithine deacetylase (405 aa)
 
          0.482
R2601_23725
Acetylornithine deacetylase (388 aa)
 
          0.469
R2601_11399
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (255 aa)
 
          0.452
R2601_27036
Oxidoreductase (487 aa)
              0.451
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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