STRINGSTRING
R2601_11404 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11404" - Putrescine-binding periplasmic protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11404Putrescine-binding periplasmic protein ; Required for the activity of the bacterial periplasmic transport system of putrescine (341 aa)    
Predicted Functional Partners:
R2601_11409
Probable permease of ABC transporter (268 aa)
 
  0.996
R2601_11414
ABC putrescine transporter, inner membrane subunit (306 aa)
 
 
  0.994
R2601_11419
Probable ATP-binding component of ABC transporter (355 aa)
 
 
  0.992
R2601_13294
Putrescine ABC transporter, permease protein (272 aa)
 
  0.981
R2601_13289
Putrescine ABC transporter, permease protein (296 aa)
 
 
  0.981
R2601_27011
Probable spermidineputrescine ABC transporter permease protein (328 aa)
 
 
  0.970
R2601_13284
Putrescine ABC transporter, ATP-binding protein (479 aa)
 
 
  0.963
R2601_20406
Spermidine/putrescine ABC transporter, permease protein (261 aa)
 
  0.954
R2601_27006
Probable spermidineputrescine ABC transporter permease protein (261 aa)
 
  0.951
R2601_17544
Probable permease of ABC transporter (256 aa)
 
  0.945
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (9%) [HD]