STRINGSTRING
R2601_11429 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11429" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11429Uncharacterized protein (176 aa)    
Predicted Functional Partners:
R2601_15070
HemY domain protein (511 aa)
   
          0.738
R2601_17107
Uncharacterized protein (106 aa)
   
          0.700
R2601_16445
F-type ATPase subunit b ; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) (183 aa)
   
          0.694
R2601_18438
Uncharacterized protein (119 aa)
   
          0.685
R2601_13644
Uncharacterized protein (679 aa)
   
          0.658
R2601_16900
Uncharacterized protein (166 aa)
   
          0.649
R2601_10214
Cytochrome c-type biogenesis protein CycH (412 aa)
   
          0.638
R2601_11434
L-asparaginase, thermolabile family protein (332 aa)
              0.616
R2601_13639
Uncharacterized protein (935 aa)
   
          0.590
R2601_13744
Uncharacterized protein (234 aa)
   
          0.582
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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