STRINGSTRING
R2601_11499 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11499" - Uncharacterized protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11499Uncharacterized protein (382 aa)    
Predicted Functional Partners:
R2601_11494
Predicted membrane protein (401 aa)
 
          0.967
parC
Topoisomerase IV subunit A ; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule (807 aa)
              0.611
R2601_25486
Peptidase, M48 family protein (230 aa)
   
   
  0.555
R2601_11484
Uncharacterized protein (209 aa)
 
          0.522
R2601_11504
Electron transfer flavoprotein, beta subunit (252 aa)
              0.515
R2601_11509
Electron transfer flavoprotein, alpha subunit (308 aa)
              0.514
rne
Ribonuclease E ; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs (985 aa)
 
          0.507
R2601_12690
RNA 2’,3’-cyclic phosphodiesterase ; Hydrolyzes RNA 2’,3’-cyclic phosphodiester to an RNA 2’- phosphomonoester (186 aa)
   
        0.476
moaC
Molybdenum cofactor biosynthesis protein C ; Together with MoaA, is involved in the conversion of 5’- GTP to cyclic pyranopterin monophosphate (cPMP or molybdopterin precursor Z) (158 aa)
              0.451
R2601_09320
Ribonuclease, Rne/Rng family protein (283 aa)
              0.440
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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