STRINGSTRING
R2601_11529 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11529" - Permease, putative in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11529Permease, putative (340 aa)    
Predicted Functional Partners:
R2601_11534
Transcriptional regulator, ArsR family protein (104 aa)
 
          0.945
R2601_13649
Uncharacterized protein (115 aa)
   
          0.647
R2601_11539
Uracil-DNA glycosylase, putative (198 aa)
              0.624
R2601_11544
Uncharacterized protein (263 aa)
              0.621
R2601_02613
Transcriptional regulator, ArsR familyy protein (112 aa)
 
          0.567
R2601_02618
Arsenite efflux pump, ACR3 family protein (348 aa)
 
          0.536
R2601_16835
Transcriptional regulator/arsenate reductase (264 aa)
 
          0.535
R2601_11524
Capsular polysaccharide export ATP-binding protein (219 aa)
              0.497
R2601_11519
Capsular polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family (600 aa)
              0.497
R2601_08301
Uncharacterized protein (236 aa)
   
          0.482
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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