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R2601_11549 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11549" - Peptidase, T4 family protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11549Peptidase, T4 family protein (333 aa)    
Predicted Functional Partners:
R2601_11574
Peptide/opine/nickel uptake family ABC transporter, permease protein (314 aa)
 
        0.623
R2601_11569
Peptide/opine/nickel uptake family ABC transporter, permease protein (271 aa)
 
          0.576
R2601_11554
3-ketoacyl-(Acyl-carrier-protein) reductase (246 aa)
              0.554
R2601_11564
Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein (570 aa)
              0.481
R2601_11559
Aldehyde dehydrogenase family protein (490 aa)
              0.473
murI
Glutamate racemase ; Provides the (R)-glutamate required for cell wall biosynthesis (270 aa)
   
        0.462
clpS
ATP-dependent Clp protease adapter protein ClpS ; Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation (120 aa)
   
        0.461
pncB
Nicotinate phosphoribosyltransferase ; Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP (429 aa)
   
        0.459
R2601_11579
NUDIX hydrolase, MutT (147 aa)
              0.409
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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