STRINGSTRING
R2601_11599 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11599" - Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11599Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein (494 aa)    
Predicted Functional Partners:
R2601_11574
Peptide/opine/nickel uptake family ABC transporter, permease protein (314 aa)
 
  0.979
R2601_05818
Oligopeptide/dipeptide ABC transporter, permease protein (298 aa)
  0.926
R2601_11569
Peptide/opine/nickel uptake family ABC transporter, permease protein (271 aa)
   
    0.919
R2601_14020
Peptide/opine/nickel uptake family ABC transporter, permease protein (315 aa)
 
  0.899
R2601_01190
Putative oligopeptide ABC transporter, permease component (270 aa)
  0.896
R2601_01185
ABC transporter permease protein (314 aa)
 
  0.891
R2601_05813
Peptide ABC transporter, permease protein (306 aa)
 
  0.890
R2601_15702
Probable inner membrane component of binding-protein-dependent transport system (316 aa)
 
  0.890
R2601_21497
ABC peptide transporter, inner membrane subunit (190 aa)
 
  0.885
R2601_03043
ABC transporter, membrane spanning protein (305 aa)
 
  0.880
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (8%) [HD]