STRINGSTRING
R2601_11634 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11634" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11634Uncharacterized protein (117 aa)    
Predicted Functional Partners:
R2601_11629
Uncharacterized protein (60 aa)
 
          0.947
R2601_11639
Uncharacterized protein (149 aa)
              0.722
R2601_13990
Uncharacterized protein (249 aa)
   
          0.680
R2601_08963
Oligoendopeptidase F (608 aa)
   
          0.673
R2601_13644
Uncharacterized protein (679 aa)
   
          0.516
R2601_14995
HD domain protein (188 aa)
   
          0.503
R2601_20976
DNA-binding protein, putative (127 aa)
   
          0.479
R2601_18563
Uncharacterized protein (86 aa)
   
          0.460
recO
Recombination protein O ; Involved in DNA repair and RecF pathway recombination (242 aa)
 
          0.459
R2601_18935
Transcriptional regulator, MarR family protein (165 aa)
   
          0.456
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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