STRINGSTRING
R2601_11769 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11769" - Transcriptional regulator, LacI family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11769Transcriptional regulator, LacI family protein (318 aa)    
Predicted Functional Partners:
R2601_21572
Regulatory protein, LacI-Periplasmic binding protein/LacI transcriptional regulator (342 aa)
   
          0.772
R2601_10659
Helicase, ATP-dependent, putative (511 aa)
   
          0.624
R2601_17769
Uncharacterized protein (110 aa)
   
          0.501
R2601_12915
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (87 aa)
   
          0.445
R2601_13830
Uncharacterized protein (50 aa)
   
          0.436
R2601_24460
C4-dicarboxylate transport sensor protein DctB, putative (567 aa)
   
          0.432
R2601_13819
Uncharacterized protein (272 aa)
   
          0.432
R2601_13845
Lipoprotein, putative (221 aa)
   
          0.418
R2601_17749
Uncharacterized protein (174 aa)
   
          0.413
R2601_07113
Lipoprotein, putative (203 aa)
   
          0.403
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (6%) [HD]