STRINGSTRING
R2601_11901 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11901" - Probable cobalamin synthesis protein, P47K family in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11901Probable cobalamin synthesis protein, P47K family (406 aa)    
Predicted Functional Partners:
R2601_11906
Uncharacterized protein (102 aa)
 
          0.884
R2601_02028
Uncharacterized protein (215 aa)
 
        0.828
R2601_11911
Putative Na+/H+ antiporter with cyclic nucleotide-binding domain (844 aa)
              0.674
map
Peptidase M ; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed (282 aa)
     
      0.666
tig
PPIase ; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase (443 aa)
     
      0.627
R2601_27101
Uncharacterized protein (437 aa)
 
        0.594
R2601_11896
TPR domain protein (574 aa)
   
        0.570
ispE
4-(cytidine-5’-diphospho)-2-C-methyl-D-erythritol kinase ; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol (293 aa)
   
        0.568
R2601_15200
Non-ribosomal peptide synthetase (1564 aa)
     
      0.544
R2601_05918
Precorrin-6Y C5,15-methyltransferase (Decarboxylating) (403 aa)
         
  0.536
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (11%) [HD]