STRINGSTRING
R2601_11926 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11926" - Phosphodiesterase-like protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11926Phosphodiesterase-like protein (249 aa)    
Predicted Functional Partners:
R2601_05293
Aerobic glycerol-3-phosphate dehydrogenase (531 aa)
   
  0.906
R2601_00965
Glycerol-3-phosphate dehydrogenase (502 aa)
   
  0.906
R2601_11931
Uncharacterized protein (153 aa)
              0.887
R2601_02643
Putative glycerol-3-phosphate dehydrogenase protein (564 aa)
   
  0.817
R2601_00255
FAD linked oxidase (946 aa)
   
 
    0.812
R2601_08943
Putative Esterase/lipase/thioesterase (323 aa)
 
 
  0.806
R2601_11921
Uncharacterized protein (399 aa)
              0.784
R2601_11916
Pterin carbinolamine dehydratase (96 aa)
              0.784
R2601_12850
Glycerol-3-phosphate dehydrogenase (265 aa)
   
  0.744
R2601_12845
Aerobic glycerol-3-phosphate dehydrogenase (273 aa)
   
  0.744
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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