STRINGSTRING
R2601_11961 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11961" - Pyridine nucleotide-disulphide oxidoreductase family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11961Pyridine nucleotide-disulphide oxidoreductase family protein (402 aa)    
Predicted Functional Partners:
R2601_12990
Glutamate synthase, large subunit (1537 aa)
   
 
  0.952
R2601_18668
Putative sarcosine dehydrogenase protein (853 aa)
   
  0.951
R2601_11966
Methyltransferase, putative (185 aa)
 
        0.936
R2601_18553
Enoyl-CoA hydratase/isomerase-3-hydroxyacyl-CoA dehydrogenase, 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein (666 aa)
   
 
  0.905
R2601_17988
Enoyl-CoA hydratase (634 aa)
   
 
  0.905
R2601_11971
Metallo-beta-lactamase family protein (322 aa)
 
 
  0.846
gcvP
Glycine dehydrogenase (aminomethyl-transferring) ; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein (948 aa)
         
  0.815
R2601_23635
Uncharacterized protein (424 aa)
   
  0.800
R2601_23555
Thiamine biosynthesis oxidoreductase ThiO (315 aa)
   
  0.800
R2601_17444
Oxidoreductase, FAD-binding protein (413 aa)
   
  0.800
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (7%) [HD]