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map protein (Pelagibaca bermudensis) - STRING interaction network
"map" - Peptidase M in Pelagibaca bermudensis
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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mapPeptidase M ; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed (282 aa)    
Predicted Functional Partners:
rplC
50S ribosomal protein L3 ; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (280 aa)
 
 
  0.856
R2601_11976
F0F1 ATP synthase subunit beta (117 aa)
   
      0.853
rplO
50S ribosomal protein L15 ; Binds to the 23S rRNA (156 aa)
 
 
  0.806
rplB
50S ribosomal protein L2 ; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome (280 aa)
 
 
  0.798
R2601_09657
50S ribosomal protein L4 (177 aa)
   
 
  0.798
R2601_21291
Hydrolase, alpha/beta fold family protein (254 aa)
   
  0.792
rplR
50S ribosomal protein L18 ; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (119 aa)
 
 
  0.792
R2601_09265
Adenylate kinase ; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP (192 aa)
 
   
  0.790
rplP
50S ribosomal protein L16 ; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs (137 aa)
 
 
  0.776
rpmD
50S ribosomal protein L30 (62 aa)
   
 
  0.768
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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