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R2601_11986 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_11986" - Mechanosensitive ion channel family protein in Pelagibaca bermudensis
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_11986Mechanosensitive ion channel family protein (292 aa)    
Predicted Functional Partners:
R2601_11976
F0F1 ATP synthase subunit beta (117 aa)
     
 
  0.625
map
Peptidase M ; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed (282 aa)
              0.605
aroB
3-dehydroquinate synthase (370 aa)
   
        0.461
R2601_22671
GTP-binding protein YchF (186 aa)
   
        0.457
R2601_22666
GTP-binding protein YchF (169 aa)
   
        0.457
rpsF
30S ribosomal protein S6 ; Binds together with S18 to 16S ribosomal RNA (118 aa)
   
        0.455
R2601_24729
Nitrogen regulatory protein P-II (112 aa)
     
      0.451
R2601_12945
Nitrogen regulatory protein P-II (112 aa)
     
      0.451
tgt
tRNA-guanine transglycosylase ; Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hypermodified nucleoside queuosine (Q) (7-(((4,5-cis- dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) (375 aa)
              0.451
rpsR
30S ribosomal protein S18 ; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (75 aa)
              0.451
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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