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R2601_12081 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_12081" - ATP-dependent DNA helicase RecQ in Pelagibaca bermudensis
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second shell of interactors
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
R2601_12081ATP-dependent DNA helicase RecQ (684 aa)    
Predicted Functional Partners:
R2601_15447
DNA polymerase I (935 aa)
   
  0.953
topA
DNA topoisomerase I ; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (906 aa)
   
  0.929
R2601_21071
ATP-dependent RNA helicase, DEAD/DEAH box family protein (727 aa)
 
  0.920
recA
Protein RecA ; Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage (213 aa)
     
  0.899
R2601_27198
DNA helicase (816 aa)
   
  0.867
R2601_12181
DNA helicase (680 aa)
   
  0.867
R2601_25726
Exonuclease SbcD (377 aa)
   
  0.843
R2601_07703
AAA ATPase (434 aa)
   
 
  0.772
R2601_26996
ATP-dependent RNA helicase RhlE (502 aa)
 
0.759
R2601_18163
Putative ATP-dependent RNA helicase protein (430 aa)
 
0.757
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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