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mepA protein (Pelagibaca bermudensis) - STRING interaction network
"mepA" - Penicillin-insensitive murein endopeptidase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mepAPenicillin-insensitive murein endopeptidase (306 aa)    
Predicted Functional Partners:
R2601_12096
Major facilitator superfamily (MFS) transporter (445 aa)
 
          0.901
R2601_12106
Uncharacterized protein (303 aa)
              0.887
R2601_19110
Uncharacterized protein (344 aa)
   
          0.749
R2601_12111
Uncharacterized protein (213 aa)
              0.720
R2601_19120
Uncharacterized protein (475 aa)
   
          0.710
R2601_12091
Uncharacterized protein (177 aa)
              0.680
R2601_18298
Ribonuclease T2 family protein (207 aa)
   
          0.628
R2601_12086
Uncharacterized protein (94 aa)
              0.509
R2601_12116
Uncharacterized protein (140 aa)
 
          0.489
R2601_07108
ErfK/YbiS/YcfS/YnhG (151 aa)
   
        0.466
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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